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Publications:

Collaborations

  • Lee YJ, Lackner LL, Nunnari JM, Phinney BS.
    Shotgun cross-linking analysis for studying quaternary and tertiary protein structures.
    J Proteome Res. 2007 Oct;6(10):3908-17. Epub 2007 Sep 14.
    PMID: 17854217 [PubMed - indexed for MEDLINE]

Publications whose Proteomics Data was generated in the Proteomics Core Facility:

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 UC Davis Proteomics Facility
www.proteomics.ucdavis.edu

 

 

 

Welcome to the UC Davis

Proteomics Facility

 

To Contact us: Please use the Contact us form on the left
or Call
Brett S. Phinney @ 530-754-5298 or the Lab @ 530-754-9474

Skype Me™!Chat with meSend me a file

 

Service Request Form


 

November 8th 2007

It's official our summer short course was a big hit this year.  Wait till next year, it will be even better...

Here are some Pictures from the course this year

UC Davis Proteomics Short Course Pictures 2007


We have also added our first "meta"- tutorial about Protein Identification using tandem mass spectrometry.This tutorial combines the best tutorials from all over the net. Could save you some time if your looking for such information

Meta Tutorial: Protein Identification

In addition I have put our Rate information in a little easier to read format (emphasis on little)

Recharges 2007




July 27th 2007

Our week long Summer Proteomics Short Course is coming up in August. Should be a pretty fun course this year. Topics will include phosphorylation discovery, label free and MRM based quantitation and protein ID and analysis.

Click here for the Flyer

UC Davis Proteomics Short Course 2007


 

July 18th 2007

We have a new exciting LC based Quantitative Proteomics Work-flow that we offer as a service. We are using Label Free proteomics
and Targeted MRM methodologies to discover and quantify protein expression differences between cell or tissue lysates or depleted Serum.
If you are currently using 2d gels, this may be a good alternative to try!

Please see the flyer in the link below if you are interested

UC Davis Quantitative Proteomics Work Flow



May 22nd 2007

We have a new Service request Form which you can fill out and then submit by e-mail or print and bring or mail to the facility
To Access the form click here or the link at the top of the page.

Also a lot of people have been asking about what is a service and what is a collaborative project. We made a document which we hope will help
Please Click this link to read the document

Collaboration and Services at the UC Davis Proteomics Core

 


 

May 9th 2007

Did you know the UC Davis Genome Center provides small grants to University Researchers to obtain data for grants and other purposes. For more information on the next round of funding please click on the link below

Facility Pilot Projects Flyer April 2007

 

Also the Genome Center has started an online billing system for the core facilities to allow users to keep track of their expenditures in real time and to decrease billing errors. All users must register and open an account on this billing system before the proteomics core can process new samples

Genome Center Billing System

 


March 26th 2007


We have 4 positions  available immediately , 2 (1 Ph D, 1 non Ph D) in proteomics and 2 for AAA and Edman sequencing. If you are interested please send an e-mail to Brett Phinney


February 9th 2007

Great news. We finally have our proteomics classes back up and running for 2007. Please Click the link below for details

2007 Proteomics Classes

Also for those of you wanting to do pull-downs, Brian Chait's web site has some very nice protocols you should try

Rockefeller Protocols




November 24th 2006

We recently Updated our Rates listed on this web site to include our On Campus Rates.

We have three sets of Prices depending on your location/Business type

On Campus Rates: Short version : Long Version
Non Profit/ Educational: Short Version : Long Version
For Profit in or out of state : Short Version : Long Version

If you Have any Questions, Please do Not hesitate to Call

 


 


November 24th 2006

We Recently Noticed that The contact US form on the left has not been working for a while.
To all those that did not receive a response, we apologize we we're not trying to ignore you, I promise..


It is now working properly, so feel free to give it a whir
l

 


 

November 24th 2006

I added the first in a series of guides for those that have never submitted samples to us before.

The first is a document about submitting samples for Protein identification.

More to follow, Please click here to see the Guides

 



September 22nd 2006

Sorry about the lack of updates recently. We have been quite busy, here are a few things that have been keeping us occupied last month

Our Summer Proteomics Short Course was completed successfully, congratulations to all of the participants for a great job.
To see some picture for the event Click HERE
To see the PDF presentation from the course Click HERE

For all of you that could not attend or which to attend next summer, please check in with the UC Davis Biotechnology Program for next summers course

 

Our rates have been officially Approved to see the damage please Click


Here for a succinct List of Rates
Here for a more verbose list of rates

 

We also have a new improved brochure in acrobat PDF in case you want to see it, or print it out or distribute it to your friends/family

 


 

August 2nd 2006

We are having a Proteomics Short Course at the end of August. You don't want to miss it. It
will be a whole week at the end of August. Please click the picture below for more info


 

July 20th 2006

Our Biannual reports to our Campus advisory committee are now available on the web site.
Please Click below to view them

Campus Proteomics Advisory Committee Reports

 


 

June 1st 2006

We have started adding current citations we feel are indicative of where the field of proteomics is going
Please click on the following link to see them. There is a comment section to leave comments too!.
We will be adding more randomly when we are inspired by papers we read. Please feel free to suggest
additional ones!

Nice Proteomics papers

 

June 1st 2006

We have our preliminary prices in place (sorry our services are not free,
contrary to the rumor going around in the GBSF building). Please check back soon
for our official prices and per project rates.

Preliminary Prices


 

May 15th 2006

Good news, the DIGE system from GE Health Care is going to be installed and operational very soon
We are currently looking for good samples to test out test this new system.
For more information on it's capabilities, please see this web site

GE Health care 2d DIGE system

Or see this current paper which uses the technology

current paper

Or Click below to see a Google scholar search for DIGE

Google Scholar


May 15th 2006

We also have a new newsletter, if you want to sign up, registered users can click here

News Letter Signup


 

April 13th 2006

 

For those interested in the Proteomics classes we will offer, please click below for the dates.
Times have not been determined yet
.

Proteomic Classes

 


 

April 12th 2006

We had a Great turnout for the Proteomics Open House. Thanks everyone for stopping by


I was able to snap some pictures. Follow the link below to see them.


Proteomics Open House Pictures



Thanks again!


 

We are having an open house for our new Facility


April 12th from 12-2 pm


Please feel free to stop in and say hello.
You can click on the flyer below for more information

 

Hope to see you there!


 

  • 2-3 year Post-Doc Opportunities are currently available
      • Want to learn State of the art Mass-spectrometry and proteomics?
      • Local to the Bay or Sacramento areas?
      • Has your research included handling proteins, running gels, doing IP pull-downs, protein purification?
      • Good with computers, basic programming skills, BLAST, other computer intensive protein analysis?
      • No Mass spectrometry experience required!
      • Please send you cv to Brett Phinney (bsphinney@ucdavis.edu)

 

 


 

We are a state of the art core facility in the new UC Davis Genome Center.
The genome center utilizes state of the art technologies including proteomics,
metabolomics, bioinformatics as well as DNA/RNA analysis and expression.

For more information on the Genome Center please head to the:

UC Davis, Genome Center


Please feel free to browse this site to see how we can help your research on the UC Davis campus.

We are actively seeking projects that can utilize the multiple technologies that the
Genome Center has available.


 

We are just getting off the ground, so please bear with us while we are getting things going.


We now have a doorbell at the entrance to 1414 GBSF to gain access.


Our shipping address is:
Proteomics Core, Room 1414
Genome and Biomedical Sciences Facility
451 East Health Sciences Drive
Davis, CA 95616-8816


If you have any questions please call

 

Proteomics Core Facility 530-754-9474
Brett Phinney 530-754-5298



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